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  "Description": "Generates phylogenetic trees and distance matrices from a\nlist of taxon names, or from a higher taxon expanded down to a\nchosen lower rank. Trees are obtained as induced subtrees of\nthe Open Tree of Life synthetic tree using the 'rotl' package\n(Michonneau, Brown and Winter, 2016,\n<doi:10.1111/2041-210X.12593>). Expansion of a higher taxon to\nits descendants uses 'taxize' (Chamberlain and Szocs, 2013,\n<doi:10.12688/f1000research.2-191.v2>).",
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